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CN09_04340 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04340" - MarR family transcriptional regulator in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04340MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)    
Predicted Functional Partners:
CN09_04335
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
         
  0.940
CN09_04330
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
         
  0.873
xseB
Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family (83 aa)
 
          0.777
CN09_29455
Farnesyl-diphosphate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the FPP/GGPP synthase family (304 aa)
         
  0.747
CN09_23015
Branched-chain-amino-acid aminotransferase; Catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; Derived by automated computational analysis using gene prediction method- Protein Homology (365 aa)
              0.744
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily (638 aa)
              0.737
CN09_16735
Acetoin utilization protein; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
         
  0.728
CN09_03845
GDP-mannose-dependent alpha-mannosyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (368 aa)
         
  0.709
CN09_01630
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family (70 aa)
 
          0.696
CN09_31335
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (498 aa)
         
  0.647
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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