CN09_04360 protein (Agrobacterium rhizogenes)

Nodes:

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second shell of interactors

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_04360

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (143 aa)

Predicted Functional Partners:

CN09_06265

0.745

CN09_11055

0.723

CN09_12485

0.712

CN09_02500

0.711

CN09_11060

0.710

CN09_15185

0.703

CN09_17475

0.702

CN09_19095

0.700

CN09_29570

0.699

CN09_08390

0.699

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CN09_02500	CN09_04360	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.711
CN09_02500	CN09_06265	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.636
CN09_02500	CN09_15185	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.507
CN09_04360	CN09_02500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.711
CN09_04360	CN09_06265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.745
CN09_04360	CN09_08390	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.699
CN09_04360	CN09_11055	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.723
CN09_04360	CN09_11060	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.710
CN09_04360	CN09_12485	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.712
CN09_04360	CN09_15185	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.703
CN09_04360	CN09_17475	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.702
CN09_04360	CN09_19095	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.700
CN09_04360	CN09_29570	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.699
CN09_06265	CN09_02500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.636
CN09_06265	CN09_04360	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.745
CN09_06265	CN09_08390	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.593
CN09_06265	CN09_11055	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.634
CN09_06265	CN09_11060	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.611
CN09_06265	CN09_12485	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	0.634
CN09_06265	CN09_17475	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.532

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