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CN09_04405 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04405" - 3'-kinase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_044053’-kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)    
Predicted Functional Partners:
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde; Belongs to the NAGSA dehydrogenase family. Type 2 subfamily (310 aa)
              0.999
CN09_04540
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the aminoglycoside phosphotransferase family (255 aa)
 
     
  0.872
CN09_10185
Agmatinase; Catalyzes the formation of putrescine from agmatine; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the arginase family (317 aa)
         
  0.705
CN09_04410
1,2-oxophytodienoate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (369 aa)
              0.655
rimP
Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits (201 aa)
              0.643
nusA
Transcription termination/antitermination protein NusA; Participates in both transcription termination and antitermination (534 aa)
              0.626
CN09_31385
Aromatic ring-cleaving dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (283 aa)
              0.567
CN09_04415
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (97 aa)
         
  0.474
CN09_10905
ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Nudix hydrolase family (139 aa)
              0.439
CN09_34160
Molybdenum cofactor biosysynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (208 aa)
 
          0.400
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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