STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04420Belongs to the LysR transcriptional regulatory family (298 aa)    
Predicted Functional Partners:
trxB
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
     
 0.989
CN09_04430
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.878
folE
GTP cyclohydrolase 1; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
CN09_31915
NADPH:quinone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
hisI
Phosphoribosyl-amp cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
     
 0.742
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis
     
 0.701
CN09_10660
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.493
CN09_28165
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.485
gltB
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.468
CN09_04435
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.445
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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