CN09_04435 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_04435

Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology (302 aa)

Predicted Functional Partners:

CN09_04440

0.954

CN09_04430

0.861

CN09_04630

0.775

CN09_05180

0.774

CN09_02495

0.768

CN09_06320

0.756

CN09_20090

0.756

CN09_03935

0.746

CN09_11985

0.739

CN09_08645

0.738

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 5

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_02495	CN09_03935	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.511
CN09_02495	CN09_04435	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.768
CN09_02495	CN09_04630	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Repressor; Derived by automated computational analysis using gene prediction method: Protein Homology	0.660
CN09_02495	CN09_05180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.611
CN09_02495	CN09_06320	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.577
CN09_02495	CN09_08645	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.466
CN09_02495	CN09_11985	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.559
CN09_02495	CN09_20090	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.670
CN09_03935	CN09_02495	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.511
CN09_03935	CN09_04435	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.746
CN09_03935	CN09_04440	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.538
CN09_03935	CN09_04630	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Repressor; Derived by automated computational analysis using gene prediction method: Protein Homology	0.753
CN09_03935	CN09_05180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.756
CN09_03935	CN09_06320	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.751
CN09_03935	CN09_08645	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.736
CN09_03935	CN09_11985	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.696
CN09_03935	CN09_20090	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.764
CN09_04430	CN09_04435	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.861
CN09_04430	CN09_04440	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.811
CN09_04435	CN09_02495	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.768