Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CN09_17085 | dnaG | CN09_17085 | CN09_04510 | Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | 0.999 |
| CN09_17085 | gyrB | CN09_17085 | CN09_17645 | Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family | Dna gyrase subunit b; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner | 0.999 |
| CN09_17085 | rpoB | CN09_17085 | CN09_08935 | Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family | Dna-directed rna polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.999 |
| CN09_17085 | rpoD | CN09_17085 | CN09_04535 | Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family | Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.931 |
| CN09_17085 | rpoZ | CN09_17085 | CN09_11020 | Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family | Dna-directed rna polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits | 0.976 |
| CN09_30775 | hfq | CN09_30775 | CN09_07730 | Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology | Rna-binding protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | 0.491 |
| CN09_30775 | rpoA | CN09_30775 | CN09_08775 | Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology | Dna-directed rna polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.947 |
| CN09_30775 | rpoB | CN09_30775 | CN09_08935 | Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology | Dna-directed rna polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.958 |
| CN09_30775 | rpoC | CN09_30775 | CN09_08930 | Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology | Dna-directed rna polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.960 |
| CN09_30775 | rpoD | CN09_30775 | CN09_04535 | Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology | Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.964 |
| CN09_30775 | rpoZ | CN09_30775 | CN09_11020 | Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology | Dna-directed rna polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits | 0.959 |
| dksA | dnaG | CN09_06495 | CN09_04510 | Molecular chaperone dnak; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | 0.430 |
| dksA | hfq | CN09_06495 | CN09_07730 | Molecular chaperone dnak; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Rna-binding protein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | 0.441 |
| dksA | rpoA | CN09_06495 | CN09_08775 | Molecular chaperone dnak; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna-directed rna polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.576 |
| dksA | rpoB | CN09_06495 | CN09_08935 | Molecular chaperone dnak; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna-directed rna polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.649 |
| dksA | rpoC | CN09_06495 | CN09_08930 | Molecular chaperone dnak; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna-directed rna polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates | 0.969 |
| dksA | rpoD | CN09_06495 | CN09_04535 | Molecular chaperone dnak; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth | 0.926 |
| dksA | rpoZ | CN09_06495 | CN09_11020 | Molecular chaperone dnak; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | Dna-directed rna polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits | 0.909 |
| dnaG | CN09_17085 | CN09_04510 | CN09_17085 | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family | 0.999 |
| dnaG | dksA | CN09_04510 | CN09_06495 | Dna primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication | Molecular chaperone dnak; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters | 0.430 |
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