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CN09_04580 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04580" - RNA signal recognition particle 4.5S RNA in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
CN09_04580RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)    
Predicted Functional Partners:
CN09_03780
Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (156 aa)
 
          0.803
CN09_06145
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)
 
          0.794
CN09_00480
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (140 aa)
 
      0.793
CN09_12230
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)
 
          0.757
CN09_06550
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (208 aa)
              0.706
CN09_11660
Dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
 
          0.694
CN09_12220
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
          0.693
CN09_28295
Toxin; Derived by automated computational analysis using gene prediction method- Protein Homology (147 aa)
 
          0.670
CN09_04585
Secondary thiamine-phosphate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
              0.668
CN09_30600
3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (154 aa)
          0.633
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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