CN09_04580 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_04580

RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology (117 aa)

Predicted Functional Partners:

CN09_03780

0.812

CN09_00480

0.811

CN09_06145

0.809

CN09_12230

0.770

CN09_06550

0.711

CN09_11660

0.693

CN09_12220

0.686

CN09_28295

0.670

CN09_04585

0.667

CN09_30600

0.633

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 3

Server load: low (6%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00480	CN09_03780	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.590
CN09_00480	CN09_04580	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.811
CN09_00480	CN09_11660	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.409
CN09_00480	CN09_30600	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.601
CN09_03780	CN09_00480	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.590
CN09_03780	CN09_04580	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.812
CN09_03780	CN09_06145	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.525
CN09_03780	CN09_12220	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.644
CN09_03780	CN09_30600	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.511
CN09_04580	CN09_00480	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.811
CN09_04580	CN09_03780	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.812
CN09_04580	CN09_04585	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	Secondary thiamine-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.667
CN09_04580	CN09_06145	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.809
CN09_04580	CN09_06550	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.711
CN09_04580	CN09_11660	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.693
CN09_04580	CN09_12220	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.686
CN09_04580	CN09_12230	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.770
CN09_04580	CN09_28295	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.670
CN09_04580	CN09_30600	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.633
CN09_04585	CN09_04580	Secondary thiamine-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method: Protein Homology	0.667