STRINGSTRING
CN09_04675 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04675" - Terminase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04675Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)    
Predicted Functional Partners:
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
 
          0.999
CN09_09245
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (401 aa)
 
        0.989
CN09_09235
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
 
        0.988
CN09_09260
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
 
        0.986
CN09_11330
Histone H1; Derived by automated computational analysis using gene prediction method- Protein Homology (415 aa)
              0.984
CN09_09375
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family (324 aa)
              0.984
CN09_11325
Peptidase U35; Derived by automated computational analysis using gene prediction method- Protein Homology (246 aa)
              0.973
CN09_09120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (478 aa)
 
          0.956
CN09_11215
Lysozyme; Derived by automated computational analysis using gene prediction method- Protein Homology (196 aa)
              0.920
CN09_27705
Cell wall anchor protein; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
   
        0.863
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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