CN09_04755 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_04755

Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology (254 aa)

Predicted Functional Partners:

CN09_20100

0.999

CN09_04760

0.935

CN09_29320

0.908

CN09_29325

0.871

CN09_04765

0.850

CN09_04780

0.806

murQ

0.744

CN09_13695

0.716

CN09_04770

0.707

CN09_04775

0.667

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04755	CN09_04760	CN09_04755	CN09_04760	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.935
CN09_04755	CN09_04765	CN09_04755	CN09_04765	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.850
CN09_04755	CN09_04770	CN09_04755	CN09_04770	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.707
CN09_04755	CN09_04775	CN09_04755	CN09_04775	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.667
CN09_04755	CN09_04780	CN09_04755	CN09_04780	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.806
CN09_04755	CN09_13695	CN09_04755	CN09_13695	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.716
CN09_04755	CN09_20100	CN09_04755	CN09_20100	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.999
CN09_04755	CN09_29320	CN09_04755	CN09_29320	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.908
CN09_04755	CN09_29325	CN09_04755	CN09_29325	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family	0.871
CN09_04755	murQ	CN09_04755	CN09_26295	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling	0.744
CN09_04760	CN09_04755	CN09_04760	CN09_04755	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.935
CN09_04760	CN09_04765	CN09_04760	CN09_04765	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.814
CN09_04760	CN09_04770	CN09_04760	CN09_04770	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.713
CN09_04760	CN09_04775	CN09_04760	CN09_04775	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.670
CN09_04760	CN09_04780	CN09_04760	CN09_04780	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.577
CN09_04760	CN09_29320	CN09_04760	CN09_29320	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.827
CN09_04760	CN09_29325	CN09_04760	CN09_29325	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family	0.814
CN09_04760	murQ	CN09_04760	CN09_26295	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling	0.761
CN09_04765	CN09_04755	CN09_04765	CN09_04755	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.850
CN09_04765	CN09_04760	CN09_04765	CN09_04760	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.814

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About