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CN09_04815 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04815" - Spermidine/putrescine ABC transporter ATP-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
CN09_04815Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (353 aa)    
Predicted Functional Partners:
CN09_04830
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (367 aa)
 
   
  0.999
CN09_04820
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (262 aa)
 
 
  0.999
CN09_04825
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
 
        0.999
CN09_12180
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (346 aa)
              0.762
CN09_31485
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
 
  0.640
CN09_18870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)
 
 
  0.639
CN09_20695
Spermidine/putrescine ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (273 aa)
 
 
  0.519
CN09_31955
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (285 aa)
 
  0.515
CN09_31480
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (289 aa)
 
  0.473
CN09_15830
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (271 aa)
 
 
  0.462
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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