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CN09_04865 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04865" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04865Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (472 aa)    
Predicted Functional Partners:
CN09_03970
Extensin; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
 
          0.793
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.627
CN09_04870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
              0.530
CN09_04875
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (112 aa)
 
          0.519
CN09_16415
ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (392 aa)
 
     
  0.504
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
 
     
  0.501
CN09_08350
Long-chain fatty acid transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (417 aa)
 
          0.499
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (189 aa)
              0.493
CN09_06475
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (183 aa)
   
          0.459
CN09_16525
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (63 aa)
 
          0.437
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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