CN09_04975 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_04975

N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)

Predicted Functional Partners:

CN09_15290

0.999

CN09_04970

0.958

CN09_04750

0.850

CN09_08315

0.824

anmK

0.796

CN09_04980

0.773

CN09_31330

0.764

gatA

0.748

CN09_29345

0.744

gatC

0.744

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04750	CN09_04970	CN09_04750	CN09_04970	Methionine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.698
CN09_04750	CN09_04975	CN09_04750	CN09_04975	Methionine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.850
CN09_04750	CN09_15290	CN09_04750	CN09_15290	Methionine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_04970	CN09_04750	CN09_04970	CN09_04750	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Methionine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.698
CN09_04970	CN09_04975	CN09_04970	CN09_04975	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.958
CN09_04970	CN09_04980	CN09_04970	CN09_04980	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.738
CN09_04970	CN09_29345	CN09_04970	CN09_29345	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Elongation factor 3; Derived by automated computational analysis using gene prediction method- Protein Homology	0.750
CN09_04975	CN09_04750	CN09_04975	CN09_04750	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Methionine synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.850
CN09_04975	CN09_04970	CN09_04975	CN09_04970	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.958
CN09_04975	CN09_04980	CN09_04975	CN09_04980	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.773
CN09_04975	CN09_08315	CN09_04975	CN09_08315	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.824
CN09_04975	CN09_15290	CN09_04975	CN09_15290	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_04975	CN09_29345	CN09_04975	CN09_29345	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Elongation factor 3; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_04975	CN09_31330	CN09_04975	CN09_31330	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP); Belongs to the thiamine-phosphate synthase family	0.764
CN09_04975	anmK	CN09_04975	CN09_26265	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family	0.796
CN09_04975	gatA	CN09_04975	CN09_09750	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln)	0.748
CN09_04975	gatC	CN09_04975	CN09_09755	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family	0.744
CN09_04980	CN09_04970	CN09_04980	CN09_04970	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.738
CN09_04980	CN09_04975	CN09_04980	CN09_04975	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.773
CN09_04980	CN09_15290	CN09_04980	CN09_15290	Lytic transglycosylase; Derived by automated computational analysis using gene prediction method- Protein Homology	Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology	0.464

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About