STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aqpZPorin; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity (228 aa)    
Predicted Functional Partners:
CN09_02960
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 
 0.999
CN09_16300
Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
   
 
 0.999
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
     
 0.999
CN09_19825
Mechanosensitive ion channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.990
CN09_01775
Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.973
CN09_23865
Cyclic nucleotide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.973
CN09_28445
Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.973
CN09_30715
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.973
CN09_31175
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.973
CN09_32660
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.973
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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