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CN09_05285 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05285" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05285Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)    
Predicted Functional Partners:
CN09_06240
Fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)- malate; Belongs to the class-I fumarase family (535 aa)
              0.999
CN09_09705
NADH dehydrogenase; Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; Derived by automated computational analysis using gene prediction method- Protein Homology (132 aa)
 
     
  0.908
CN09_05280
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (64 aa)
              0.907
CN09_05275
Arylsulfate sulfotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (70 aa)
 
          0.879
CN09_01990
UPF0335 protein CN09_01990; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0335 family (84 aa)
   
     
  0.792
CN09_17775
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
   
     
  0.782
CN09_17570
Recombinase RecB; Derived by automated computational analysis using gene prediction method- Protein Homology (1063 aa)
   
          0.770
CN09_17575
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the helicase family. UvrD subfamily (1187 aa)
   
          0.768
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (259 aa)
 
          0.765
CN09_01630
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family (70 aa)
   
          0.765
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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