STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05355Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology (321 aa)    
Predicted Functional Partners:
CN09_05350
GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.962
CN09_05360
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.951
CN09_05365
4-oxalomesaconate tautomerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.946
CN09_05320
3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.814
CN09_05315
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.677
CN09_30980
S-adenosylmethionine: 2-demethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.593
CN09_05340
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family
 
     0.588
CN09_05345
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family
 
     0.572
CN09_05335
Hemolysin III; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.569
CN09_05325
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.567
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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