STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05400GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (191 aa)    
Predicted Functional Partners:
serB
Phosphoserine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.847
CN09_06815
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.756
CN09_03485
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.747
miaA
Trna delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
     
 0.699
CN09_20755
Lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.468
CN09_27680
Flagellar protein FlaR; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.458
CN09_00805
L-lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.433
CN09_18285
Deaminase/reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.424
CN09_10640
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.411
CN09_04095
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 
 0.405
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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