CN09_05500 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_05500

TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (205 aa)

Predicted Functional Partners:

CN09_05495

0.816

CN09_22555

0.693

CN09_05510

0.576

CN09_05515

0.560

CN09_18835

0.413

CN09_33205

0.406

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_05495	CN09_05500	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.816
CN09_05495	CN09_05510	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.472
CN09_05500	CN09_05495	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.816
CN09_05500	CN09_05510	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.576
CN09_05500	CN09_05515	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.560
CN09_05500	CN09_18835	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.413
CN09_05500	CN09_22555	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.693
CN09_05500	CN09_33205	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.406
CN09_05510	CN09_05495	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.472
CN09_05510	CN09_05500	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.576
CN09_05510	CN09_05515	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.689
CN09_05515	CN09_05500	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.560
CN09_05515	CN09_05510	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.689
CN09_18835	CN09_05500	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.413
CN09_22555	CN09_05500	Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.693
CN09_33205	CN09_05500	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.406