STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05590ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (326 aa)    
Predicted Functional Partners:
CN09_05600
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.994
CN09_05595
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.988
CN09_22045
Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.854
CN09_05605
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.611
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein
       0.603
CN09_05585
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.570
CN09_05610
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.513
guaB
inosine-5-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth
     
 0.406
CN09_05615
Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.401
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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