CN09_05600 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_05600

ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)

Predicted Functional Partners:

CN09_05590

0.994

CN09_05595

0.952

CN09_29130

0.612

CN09_29140

0.598

CN09_05605

0.595

CN09_05585

0.539

CN09_05610

0.515

CN09_18870

0.489

CN09_31485

0.472

CN09_09945

0.421

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 2

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_05585	CN09_05590	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.569
CN09_05585	CN09_05595	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.540
CN09_05585	CN09_05600	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.539
CN09_05590	CN09_05585	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.569
CN09_05590	CN09_05595	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.987
CN09_05590	CN09_05600	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.994
CN09_05590	CN09_05605	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.605
CN09_05590	CN09_05610	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.511
CN09_05595	CN09_05585	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.540
CN09_05595	CN09_05590	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.987
CN09_05595	CN09_05600	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.952
CN09_05595	CN09_05605	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.663
CN09_05595	CN09_05610	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.537
CN09_05600	CN09_05585	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.539
CN09_05600	CN09_05590	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.994
CN09_05600	CN09_05595	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.952
CN09_05600	CN09_05605	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.595
CN09_05600	CN09_05610	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology	0.515
CN09_05600	CN09_09945	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.421
CN09_05600	CN09_18870	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.489