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CN09_05600 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05600" - ABC transporter ATP-binding protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_05600ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)    
Predicted Functional Partners:
CN09_05590
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (326 aa)
     
  0.994
CN09_05595
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (564 aa)
     
  0.952
CN09_29130
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (290 aa)
         
  0.612
CN09_29140
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (95 aa)
              0.598
CN09_05605
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (370 aa)
 
          0.595
CN09_05585
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (352 aa)
              0.539
CN09_05610
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
              0.515
CN09_18870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (593 aa)
 
     
  0.489
CN09_31485
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
          0.472
CN09_09945
Biotin biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
   
        0.421
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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