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CN09_05610 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05610" - DNA mismatch repair protein MutT in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_05610DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)    
Predicted Functional Partners:
CN09_05605
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (370 aa)
              0.901
CN09_05615
Phenazine biosynthesis protein PhzF; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
 
          0.775
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
 
     
  0.770
CN09_17820
Pyridoxal kinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the pyridoxine kinase family (290 aa)
   
   
  0.748
CN09_16050
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
   
          0.712
CN09_07965
Phasin family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (122 aa)
 
          0.702
CN09_27960
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (167 aa)
   
          0.665
CN09_17615
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (148 aa)
 
          0.652
CN09_15835
Cell envelope biogenesis protein AsmA; Derived by automated computational analysis using gene prediction method- Protein Homology (631 aa)
 
          0.648
CN09_11680
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
          0.647
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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