STRINGSTRING
CN09_05905 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05905" - NADPH:quinone oxidoreductase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05905NADPH-quinone oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (342 aa)    
Predicted Functional Partners:
CN09_05910
Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
          0.982
CN09_05895
FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis- addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method- Protein Homology (401 aa)
 
     
  0.962
CN09_05885
Acyl carrier protein; Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; Derived by automated computational analysis using gene prediction method- Protein Homology (92 aa)
 
   
  0.945
CN09_05900
FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis- addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; Derived by automated computational analysis using gene prediction method- Protein Homology (428 aa)
     
  0.942
CN09_05890
3-hydroxyacyl-ACP dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
 
     
  0.892
CN09_05915
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
            0.508
CN09_10050
Acyl CoA-acyl carrier protein transacylase; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
       
  0.439
ndvA
Beta-(1-->2)glucan export ATP-binding/permease protein NdvA; Involved in Beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP- binding domain (NBD) is responsible for energy generation (589 aa)
 
   
  0.421
CN09_06265
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
   
          0.421
CN09_07990
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (260 aa)
 
 
 
  0.415
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (6%) [HD]