CN09_05925 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_05925

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (401 aa)

Predicted Functional Partners:

CN09_05920

0.845

CN09_05700

0.801

CN09_23625

0.764

CN09_05930

0.697

CN09_05945

0.577

znuC

0.545

CN09_05940

0.532

CN09_01980

0.407

macB

0.401

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01980	CN09_05700	CN09_01980	CN09_05700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Drug-proton antiporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.450
CN09_01980	CN09_05925	CN09_01980	CN09_05925	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.407
CN09_01980	CN09_23625	CN09_01980	CN09_23625	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.850
CN09_01980	macB	CN09_01980	CN09_25550	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	0.428
CN09_05700	CN09_01980	CN09_05700	CN09_01980	Drug-proton antiporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.450
CN09_05700	CN09_05925	CN09_05700	CN09_05925	Drug-proton antiporter; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.801
CN09_05920	CN09_05925	CN09_05920	CN09_05925	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_05920	CN09_05930	CN09_05920	CN09_05930	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Zinc transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.588
CN09_05920	CN09_05940	CN09_05920	CN09_05940	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.429
CN09_05920	CN09_05945	CN09_05920	CN09_05945	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Fur family	0.429
CN09_05920	znuC	CN09_05920	CN09_05935	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family	0.429
CN09_05925	CN09_01980	CN09_05925	CN09_01980	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.407
CN09_05925	CN09_05700	CN09_05925	CN09_05700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Drug-proton antiporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.801
CN09_05925	CN09_05920	CN09_05925	CN09_05920	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.845
CN09_05925	CN09_05930	CN09_05925	CN09_05930	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Zinc transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.697
CN09_05925	CN09_05940	CN09_05925	CN09_05940	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.532
CN09_05925	CN09_05945	CN09_05925	CN09_05945	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Fur family	0.577
CN09_05925	CN09_23625	CN09_05925	CN09_23625	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Precorrin-6Y methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.764
CN09_05925	macB	CN09_05925	CN09_25550	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	0.401
CN09_05925	znuC	CN09_05925	CN09_05935	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family	0.545

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