CN09_06025 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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experimentally determined

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gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_06025

Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology (409 aa)

Predicted Functional Partners:

CN09_07480

0.652

CN09_14775

0.622

CN09_06030

0.612

CN09_06015

0.562

CN09_10585

0.561

CN09_10285

0.560

CN09_10005

0.558

CN09_16415

0.553

CN09_10280

0.532

CN09_13590

0.528

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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node1	node2	node1 annotation	node2 annotation	score
CN09_06015	CN09_06025	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.562
CN09_06015	CN09_10280	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.406
CN09_06015	CN09_10585	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.515
CN09_06025	CN09_06015	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.562
CN09_06025	CN09_06030	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.612
CN09_06025	CN09_07480	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.652
CN09_06025	CN09_10005	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.558
CN09_06025	CN09_10280	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.532
CN09_06025	CN09_10285	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.560
CN09_06025	CN09_10585	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.561
CN09_06025	CN09_13590	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.528
CN09_06025	CN09_14775	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	Lysine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.622
CN09_06025	CN09_16415	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.553
CN09_06030	CN09_06025	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.612
CN09_07480	CN09_06025	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.652
CN09_10005	CN09_06025	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Extensin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.558
CN09_10005	CN09_10285	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_10005	CN09_10585	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.612
CN09_10005	CN09_13590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.755
CN09_10280	CN09_06015	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.406