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CN09_06400 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_06400" - Beta-mannosidase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06400Beta-mannosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (820 aa)    
Predicted Functional Partners:
CN09_06395
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (363 aa)
         
  0.794
CN09_06405
Xylose isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (253 aa)
 
          0.791
CN09_06410
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)
 
     
  0.789
CN09_06420
Beta-xylosidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 43 family (536 aa)
 
     
  0.737
CN09_06385
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (301 aa)
              0.727
CN09_06390
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)
         
  0.720
CN09_06415
L-glyceraldehyde 3-phosphate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
     
  0.709
CN09_24180
Alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
   
  0.665
CN09_06375
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (411 aa)
 
     
  0.640
CN09_13695
Beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method- Protein Homology (639 aa)
 
   
  0.572
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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