STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06415L-glyceraldehyde 3-phosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology (343 aa)    
Predicted Functional Partners:
CN09_06420
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family
 
     0.890
CN09_06405
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.883
CN09_06410
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.762
CN09_06400
Beta-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.709
CN09_06310
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.707
CN09_22435
Sulfonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.571
CN09_06390
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.488
CN09_06385
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.473
CN09_14720
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
 
   
 0.462
glk
Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial glucokinase family
     
 0.453
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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