STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06490Phosphohistidine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology (163 aa)    
Predicted Functional Partners:
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.999
CN09_06480
UPF0283 membrane protein CN09_06480; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.869
CN09_06485
Amino acid regulated cytosolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.869
CN09_30585
Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.833
CN09_28315
Chorismate mutase; Catalyzes the interconversion of chorismate to prephenate; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.747
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family
 
   
 0.734
CN09_03210
Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology
  
    0.713
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.699
yidC
Membrane protein insertase YidC; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins
  
    0.664
CN09_10965
Molybdenum cofactor sulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.657
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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