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CN09_06550 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_06550" - Glutathione S-transferase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06550Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (208 aa)    
Predicted Functional Partners:
CN09_06145
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology (230 aa)
 
          0.765
CN09_04580
RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method- Protein Homology (117 aa)
              0.706
CN09_27605
Cobalamin biosynthesis protein CobS; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
              0.644
CN09_06555
Isocitrate dehydrogenase [NADP]; Converts isocitrate to alpha ketoglutarate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the isocitrate and isopropylmalate dehydrogenases family (404 aa)
         
  0.607
CN09_21140
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
        0.558
CN09_34125
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
        0.553
CN09_12220
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (259 aa)
              0.531
CN09_33130
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
        0.516
CN09_18755
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (234 aa)
        0.514
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (120 aa)
   
 
  0.444
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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