STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_06765Competence protein TfoX; Derived by automated computational analysis using gene prediction method: Protein Homology (106 aa)    
Predicted Functional Partners:
CN09_06760
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.877
CN09_06755
XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.875
CN09_06750
XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.874
CN09_06745
Von Willebrand factor A; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.869
CN09_06740
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.867
CN09_06735
4-hydroxyphenylacetate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.804
sufC
Cysteine desulfurase; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
sufD
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
CN09_06850
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family
       0.756
CN09_06855
FeS assembly SUF system protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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