CN09_07030 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

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[Homology]

Score

CN09_07030

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)

Predicted Functional Partners:

CN09_15450

0.779

CN09_17880

0.778

CN09_12545

0.777

CN09_16585

0.776

CN09_08500

0.775

CN09_11870

0.773

CN09_16650

0.772

CN09_15750

0.771

CN09_15685

0.770

CN09_10285

0.770

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

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node1	node2	node1 annotation	node2 annotation	score
CN09_07030	CN09_08500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.775
CN09_07030	CN09_10285	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_07030	CN09_11870	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.773
CN09_07030	CN09_12545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.777
CN09_07030	CN09_15450	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_07030	CN09_15685	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_07030	CN09_15750	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.771
CN09_07030	CN09_16585	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_07030	CN09_16650	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.772
CN09_07030	CN09_17880	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778
CN09_08500	CN09_07030	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.775
CN09_08500	CN09_10285	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_08500	CN09_11870	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_08500	CN09_12545	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778
CN09_08500	CN09_15450	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_08500	CN09_15685	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780
CN09_08500	CN09_15750	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.780
CN09_08500	CN09_16585	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_08500	CN09_16650	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.778
CN09_08500	CN09_17880	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.781