CN09_07050 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_07050

Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family (320 aa)

Predicted Functional Partners:

CN09_03380

0.769

pqqC

0.726

CN09_32490

0.723

pqqE

0.723

CN09_07055

0.648

pqqB

0.623

polA

0.524

CN09_07060

0.442

CN09_29380

0.422

priA

0.408

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03380	CN09_07050	CN09_03380	CN09_07050	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	0.769
CN09_03380	CN09_32490	CN09_03380	CN09_32490	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pyrroloquinoline quinone biosynthesis protein PqqD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_03380	polA	CN09_03380	CN09_13050	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.918
CN09_03380	pqqE	CN09_03380	CN09_32485	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	Coenzyme PQQ synthesis protein E; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the radical SAM superfamily. PqqE family	0.999
CN09_07050	CN09_03380	CN09_07050	CN09_03380	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.769
CN09_07050	CN09_07055	CN09_07050	CN09_07055	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.648
CN09_07050	CN09_07060	CN09_07050	CN09_07060	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.442
CN09_07050	CN09_29380	CN09_07050	CN09_29380	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.422
CN09_07050	CN09_32490	CN09_07050	CN09_32490	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	Pyrroloquinoline quinone biosynthesis protein PqqD; Derived by automated computational analysis using gene prediction method- Protein Homology	0.723
CN09_07050	polA	CN09_07050	CN09_13050	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity	0.524
CN09_07050	pqqB	CN09_07050	CN09_32500	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	Coenzyme PQQ synthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm	0.623
CN09_07050	pqqC	CN09_07050	CN09_32495	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	Pyrroloquinoline-quinone synthase; Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ	0.726
CN09_07050	pqqE	CN09_07050	CN09_32485	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	Coenzyme PQQ synthesis protein E; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the radical SAM superfamily. PqqE family	0.723
CN09_07050	priA	CN09_07050	CN09_27905	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	Primosomal protein N’; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA	0.408
CN09_07055	CN09_07050	CN09_07055	CN09_07050	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	0.648
CN09_07055	CN09_07060	CN09_07055	CN09_07060	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.958
CN09_07060	CN09_07050	CN09_07060	CN09_07050	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	0.442
CN09_07060	CN09_07055	CN09_07060	CN09_07055	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.958
CN09_29380	CN09_07050	CN09_29380	CN09_07050	Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S33 family	0.422
CN09_32490	CN09_03380	CN09_32490	CN09_03380	Pyrroloquinoline quinone biosynthesis protein PqqD; Derived by automated computational analysis using gene prediction method- Protein Homology	2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999

page 1 of 3

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About