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CN09_07385 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_07385" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_07385Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)    
Predicted Functional Partners:
CN09_12300
Tat protein; Derived by automated computational analysis using gene prediction method- Protein Homology (457 aa)
 
          0.728
CN09_15180
Tellurite resistance protein TerB; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)
              0.692
CN09_07380
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP (421 aa)
              0.664
CN09_07375
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (168 aa)
              0.614
CN09_07190
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (177 aa)
   
          0.553
CN09_07195
Adenylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (619 aa)
   
          0.479
CN09_02045
Esterase; Derived by automated computational analysis using gene prediction method- Protein Homology (350 aa)
   
          0.449
CN09_01735
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (157 aa)
 
          0.445
CN09_04065
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (188 aa)
   
          0.430
CN09_04265
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (486 aa)
   
          0.414
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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