STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_07545Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (104 aa)    
Predicted Functional Partners:
CN09_06240
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate
 
     0.999
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
       0.998
CN09_28015
Fumarate reductase; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily
 
 
 0.971
putA
Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source
     
 0.952
recG
Atp-dependent dna helicase recg; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA)
       0.883
CN09_28010
Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family
 
  
 0.768
rplP
Large subunit ribosomal protein l16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
  
    0.749
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
   
   0.744
CN09_14630
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.722
sdhC
Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.719
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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