CN09_07755 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_07755

ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)

Predicted Functional Partners:

CN09_07750

0.998

ispDF

0.991

CN09_07740

0.984

CN09_07760

0.972

glnA

0.911

CN09_07745

0.899

glnD

0.884

CN09_15420

0.876

CN09_07770

0.859

hfq

0.820

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_07740	CN09_07745	CN09_07740	CN09_07745	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.998
CN09_07740	CN09_07750	CN09_07740	CN09_07750	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology	0.610
CN09_07740	CN09_07755	CN09_07740	CN09_07755	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_07740	CN09_07760	CN09_07740	CN09_07760	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	0.844
CN09_07740	CN09_07770	CN09_07740	CN09_07770	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the CinA family	0.804
CN09_07740	CN09_15420	CN09_07740	CN09_15420	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.663
CN09_07740	glnA	CN09_07740	CN09_07495	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology	0.843
CN09_07740	hfq	CN09_07740	CN09_07730	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs	0.847
CN09_07740	ispDF	CN09_07740	CN09_07765	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.827
CN09_07745	CN09_07740	CN09_07745	CN09_07740	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.998
CN09_07745	CN09_07750	CN09_07745	CN09_07750	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology	0.690
CN09_07745	CN09_07755	CN09_07745	CN09_07755	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.899
CN09_07745	CN09_07760	CN09_07745	CN09_07760	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines	0.844
CN09_07745	CN09_07770	CN09_07745	CN09_07770	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the CinA family	0.804
CN09_07745	CN09_15420	CN09_07745	CN09_15420	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990
CN09_07745	glnA	CN09_07745	CN09_07495	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Forms a homododecamer; forms glutamine from ammonia and glutamate with the conversion of ATP to ADP and phosphate; also functions in the assimilation of ammonia; highly regulated protein controlled by the addition/removal of adenylyl groups by adenylyltransferase from specific tyrosine residues; addition of adenylyl groups results in inactivation of the enzyme; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_07745	hfq	CN09_07745	CN09_07730	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs	0.862
CN09_07745	ispDF	CN09_07745	CN09_07765	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.999
CN09_07750	CN09_07740	CN09_07750	CN09_07740	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.610
CN09_07750	CN09_07745	CN09_07750	CN09_07745	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.690

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About