CN09_07995 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

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Experiments

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[Homology]

Score

CN09_07995

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (81 aa)

Predicted Functional Partners:

CN09_08000

0.999

polA

0.999

CN09_07990

0.958

nnrD

0.935

CN09_02985

0.784

CN09_02005

0.782

CN09_14700

0.781

CN09_07115

0.779

CN09_17560

0.769

CN09_16825

0.769

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_02005	CN09_02985	CN09_02005	CN09_02985	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.781
CN09_02005	CN09_07115	CN09_02005	CN09_07115	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_02005	CN09_07990	CN09_02005	CN09_07990	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.702
CN09_02005	CN09_07995	CN09_02005	CN09_07995	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.782
CN09_02005	CN09_08000	CN09_02005	CN09_08000	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Salicylate hydroxylase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.520
CN09_02005	CN09_14700	CN09_02005	CN09_14700	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.762
CN09_02005	CN09_16825	CN09_02005	CN09_16825	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology	0.733
CN09_02005	CN09_17560	CN09_02005	CN09_17560	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Chlorosome protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.605
CN09_02985	CN09_02005	CN09_02985	CN09_02005	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.781
CN09_02985	CN09_07115	CN09_02985	CN09_07115	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_02985	CN09_07990	CN09_02985	CN09_07990	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.754
CN09_02985	CN09_07995	CN09_02985	CN09_07995	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.784
CN09_02985	CN09_14700	CN09_02985	CN09_14700	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.775
CN09_02985	CN09_16825	CN09_02985	CN09_16825	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Invasion protein B; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_02985	CN09_17560	CN09_02985	CN09_17560	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	Chlorosome protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.655
CN09_07115	CN09_02005	CN09_07115	CN09_02005	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.770
CN09_07115	CN09_02985	CN09_07115	CN09_02985	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_07115	CN09_07990	CN09_07115	CN09_07990	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.691
CN09_07115	CN09_07995	CN09_07115	CN09_07995	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.779
CN09_07115	CN09_14700	CN09_07115	CN09_14700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.750

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