STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phaCPoly(3-hydroxyalkanoate) synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology (615 aa)    
Predicted Functional Partners:
phaZ
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.987
phaR
Polyhydroxyalkanoate synthesis repressor PhaR; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.973
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
    
 0.910
sfsA
Xre family transcriptional regulator; Belongs to the SfsA family
       0.904
CN09_08180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0758 family
       0.863
CN09_08175
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed
       0.861
CN09_08150
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.828
CN09_03745
3-hydroxybutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.820
CN09_08145
Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.815
recJ
Single-stranded DNA exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.805
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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