CN09_08245 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_08245

Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (286 aa)

Predicted Functional Partners:

CN09_08255

0.996

CN09_08250

0.992

CN09_15390

0.983

ispH

0.916

ispDF

0.909

CN09_08260

0.849

CN09_26165

0.819

CN09_03385

0.814

CN09_24545

0.771

CN09_08265

0.747

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03385	CN09_08245	CN09_03385	CN09_08245	Sterol desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.814
CN09_08245	CN09_03385	CN09_08245	CN09_03385	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Sterol desaturase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.814
CN09_08245	CN09_08250	CN09_08245	CN09_08250	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.992
CN09_08245	CN09_08255	CN09_08245	CN09_08255	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.996
CN09_08245	CN09_08260	CN09_08245	CN09_08260	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Preprotein translocase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.849
CN09_08245	CN09_08265	CN09_08245	CN09_08265	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.747
CN09_08245	CN09_15390	CN09_08245	CN09_15390	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.983
CN09_08245	CN09_24545	CN09_08245	CN09_24545	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	FAD-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.771
CN09_08245	CN09_26165	CN09_08245	CN09_26165	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glucosyl transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.819
CN09_08245	ispDF	CN09_08245	CN09_07765	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Bifunctional enzyme IspD/IspF; Bifunctional enzyme that catalyzes the formation of 4- diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl- D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2- phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4- cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF)	0.909
CN09_08245	ispH	CN09_08245	CN09_16895	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis; Belongs to the IspH family	0.916
CN09_08250	CN09_08245	CN09_08250	CN09_08245	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.992
CN09_08250	CN09_08255	CN09_08250	CN09_08255	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.996
CN09_08250	CN09_08260	CN09_08250	CN09_08260	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Preprotein translocase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_08250	CN09_08265	CN09_08250	CN09_08265	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.837
CN09_08250	CN09_15390	CN09_08250	CN09_15390	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	0.981
CN09_08255	CN09_08245	CN09_08255	CN09_08245	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Phytoene synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.996
CN09_08255	CN09_08250	CN09_08255	CN09_08250	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.996
CN09_08255	CN09_08260	CN09_08255	CN09_08260	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	Preprotein translocase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_08255	CN09_08265	CN09_08255	CN09_08265	Multifunctional fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.988

page 1 of 4

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About