STRINGSTRING
CN09_08345 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_08345" - Exopolysaccharide production negative regulator in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_08345Exopolysaccharide production negative regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (267 aa)    
Predicted Functional Partners:
CN09_14700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (86 aa)
   
          0.750
CN09_02090
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (409 aa)
   
          0.746
ilvD
Dihydroxy-acid dehydratase; Catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the IlvD/Edd family (612 aa)
              0.744
CN09_15220
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (88 aa)
   
          0.742
CN09_07505
Invasion associated locus B family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
   
          0.735
CN09_11895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (190 aa)
   
          0.733
CN09_16625
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (188 aa)
   
          0.725
CN09_14520
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
   
     
  0.719
CN09_14535
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (110 aa)
   
          0.710
CN09_11890
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
   
          0.709
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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