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CN09_08530 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_08530" - Peroxiredoxin in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_08530Peroxiredoxin; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (954 aa)
         
  0.893
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.835
CN09_17845
DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Dps family (169 aa)
   
   
  0.700
CN09_27405
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (197 aa)
              0.560
CN09_08525
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
         
  0.468
glyS
Glycine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method- Protein Homology (742 aa)
              0.467
CN09_10865
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method- Protein Homology (668 aa)
     
   
  0.454
CN09_11090
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (210 aa)
              0.430
CN09_10945
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family (168 aa)
   
   
  0.413
CN09_01305
UPF0391 membrane protein CN09_01305; Derived by automated computational analysis using gene prediction method- Protein Homology (57 aa)
 
        0.406
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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