STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_08530Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology (158 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein
     
 0.892
polA
In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
       0.836
CN09_17845
Dna-binding protein; Belongs to the Dps family
  
  
 0.641
CN09_27405
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.560
CN09_16300
Potassium transporter trka; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family
     
 0.537
glyS
Glycyl-trna synthetase subunit beta; Glycine--tRNA ligase beta subunit; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.467
CN09_08525
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.458
CN09_31570
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide
  
  
 0.451
CN09_11090
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.431
CN09_10865
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology
   
  
 0.420
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (10%) [HD]