CN09_08715 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_08715

Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family (467 aa)

Predicted Functional Partners:

CN09_08710

0.954

secY

0.799

rpoA

0.780

CN09_06915

0.778

rplQ

0.770

rpsK

0.770

rpsM

0.749

CN09_06910

0.744

CN09_06905

0.744

CN09_10375

0.729

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_06905	CN09_06910	CN09_06905	CN09_06910	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.968
CN09_06905	CN09_06915	CN09_06905	CN09_06915	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.975
CN09_06905	CN09_08710	CN09_06905	CN09_08710	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.801
CN09_06905	CN09_08715	CN09_06905	CN09_08715	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family	0.744
CN09_06905	rplQ	CN09_06905	CN09_08770	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method- Protein Homology	0.826
CN09_06905	rpoA	CN09_06905	CN09_08775	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.830
CN09_06905	rpsK	CN09_06905	CN09_08780	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	0.804
CN09_06905	rpsM	CN09_06905	CN09_08785	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P- sites	0.810
CN09_06905	secY	CN09_06905	CN09_08795	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	Protein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently	0.808
CN09_06910	CN09_06905	CN09_06910	CN09_06905	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	0.968
CN09_06910	CN09_06915	CN09_06910	CN09_06915	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.952
CN09_06910	CN09_08710	CN09_06910	CN09_08710	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.750
CN09_06910	CN09_08715	CN09_06910	CN09_08715	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Periplasmic serine endoprotease DegP-like; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the peptidase S1C family	0.744
CN09_06910	CN09_10375	CN09_06910	CN09_10375	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family	0.853
CN09_06910	rplQ	CN09_06910	CN09_08770	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method- Protein Homology	0.740
CN09_06910	rpoA	CN09_06910	CN09_08775	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	0.676
CN09_06910	rpsK	CN09_06910	CN09_08780	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome	0.414
CN09_06915	CN09_06905	CN09_06915	CN09_06905	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil	0.975
CN09_06915	CN09_06910	CN09_06915	CN09_06910	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	HAD family hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.952
CN09_06915	CN09_08710	CN09_06915	CN09_08710	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.795

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About