STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_08980Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (228 aa)    
Predicted Functional Partners:
CN09_08975
3-deoxy-manno-octulosonate cytidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.886
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family
       0.853
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate; In the C-terminal section; belongs to the HTP reductase family
       0.838
CN09_01945
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     0.791
CN09_04440
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.519
CN09_02495
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.501
CN09_08985
Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.473
CN09_23675
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.441
CN09_24525
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.441
CN09_11985
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
 0.436
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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