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CN09_09375 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_09375" - Methyltransferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_09375Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family (324 aa)    
Predicted Functional Partners:
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1702 aa)
         
  0.999
CN09_09380
Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology (462 aa)
          0.997
CN09_09285
Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology (497 aa)
              0.984
CN09_04675
Terminase; Derived by automated computational analysis using gene prediction method- Protein Homology (513 aa)
              0.984
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
         
  0.913
CN09_09370
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (482 aa)
         
  0.887
CN09_09385
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
         
  0.879
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
         
  0.869
CN09_09390
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (225 aa)
              0.850
CN09_09365
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (152 aa)
              0.845
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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