CN09_09400 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_09400

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (89 aa)

Predicted Functional Partners:

CN09_09395

0.845

CN09_09390

0.566

CN09_09385

0.566

CN09_09380

0.566

CN09_09375

0.566

CN09_09370

0.566

CN09_09365

0.566

CN09_09405

0.470

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

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© STRING Consortium 2020

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node1	node2	node1 annotation	node2 annotation	score
CN09_09365	CN09_09370	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_09365	CN09_09375	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family	0.845
CN09_09365	CN09_09380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_09365	CN09_09385	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_09365	CN09_09390	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_09365	CN09_09395	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.566
CN09_09365	CN09_09400	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.566
CN09_09370	CN09_09365	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.845
CN09_09370	CN09_09375	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family	0.887
CN09_09370	CN09_09380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.870
CN09_09370	CN09_09385	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.890
CN09_09370	CN09_09390	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_09370	CN09_09395	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.566
CN09_09370	CN09_09400	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.566
CN09_09375	CN09_09365	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.845
CN09_09375	CN09_09370	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.887
CN09_09375	CN09_09380	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family	Helicase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.997
CN09_09375	CN09_09385	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.879
CN09_09375	CN09_09390	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.850
CN09_09375	CN09_09395	Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the N(4)/N(6)-methyltransferase family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.566