node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
prfB | rplA | CN09_09640 | CN09_08950 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 0.999 |
prfB | rplB | CN09_09640 | CN09_08880 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome | 0.999 |
prfB | rplC | CN09_09640 | CN09_08895 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.999 |
prfB | rplD | CN09_09640 | CN09_08890 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 0.999 |
prfB | rplK | CN09_09640 | CN09_08955 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors | 0.999 |
prfB | rplM | CN09_09640 | CN09_10165 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | 0.999 |
prfB | rplO | CN09_09640 | CN09_08800 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L15; Binds to the 23S rRNA | 0.999 |
prfB | rplQ | CN09_09640 | CN09_08770 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
prfB | rplT | CN09_09640 | CN09_13810 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit | 0.999 |
prfB | rplV | CN09_09640 | CN09_08870 | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome | 0.999 |
rplA | prfB | CN09_08950 | CN09_09640 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA | 0.999 |
rplA | rplB | CN09_08950 | CN09_08880 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome | 0.999 |
rplA | rplC | CN09_08950 | CN09_08895 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit | 0.999 |
rplA | rplD | CN09_08950 | CN09_08890 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel | 0.999 |
rplA | rplK | CN09_08950 | CN09_08955 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors | 0.999 |
rplA | rplM | CN09_08950 | CN09_10165 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | 0.999 |
rplA | rplO | CN09_08950 | CN09_08800 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L15; Binds to the 23S rRNA | 0.999 |
rplA | rplQ | CN09_08950 | CN09_08770 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
rplA | rplT | CN09_08950 | CN09_13810 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit | 0.999 |
rplA | rplV | CN09_08950 | CN09_08870 | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release | 50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome | 0.999 |