CN09_09660 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_09660

1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology (385 aa)

Predicted Functional Partners:

CN09_01825

0.979

CN09_09665

0.862

hisA

0.798

CN09_09675

0.777

CN09_09680

0.746

CN09_10625

0.744

CN09_09650

0.744

CN09_09645

0.696

aat

0.671

ate

0.647

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01825	CN09_09645	CN09_01825	CN09_09645	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01825	CN09_09660	CN09_01825	CN09_09660	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.979
CN09_01825	CN09_09665	CN09_01825	CN09_09665	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.957
CN09_01825	hisA	CN09_01825	CN09_17485	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; Derived by automated computational analysis using gene prediction method- Protein Homology	0.922
CN09_09645	CN09_01825	CN09_09645	CN09_01825	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_09645	CN09_09650	CN09_09645	CN09_09650	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.887
CN09_09645	CN09_09660	CN09_09645	CN09_09660	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.696
CN09_09650	CN09_09645	CN09_09650	CN09_09645	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.887
CN09_09650	CN09_09660	CN09_09650	CN09_09660	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_09650	CN09_09665	CN09_09650	CN09_09665	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.732
CN09_09660	CN09_01825	CN09_09660	CN09_01825	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.979
CN09_09660	CN09_09645	CN09_09660	CN09_09645	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.696
CN09_09660	CN09_09650	CN09_09660	CN09_09650	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_09660	CN09_09665	CN09_09660	CN09_09665	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.862
CN09_09660	CN09_09675	CN09_09660	CN09_09675	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA	0.777
CN09_09660	CN09_09680	CN09_09660	CN09_09680	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Acetyl-CoA carboxylase; An AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; Derived by automated computational analysis using gene prediction method- Protein Homology	0.746
CN09_09660	CN09_10625	CN09_09660	CN09_10625	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	C4-dicarboxylate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology	0.744
CN09_09660	aat	CN09_09660	CN09_09685	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Leucyl/phenylalanyl-tRNA--protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine	0.671
CN09_09660	ate	CN09_09660	CN09_10420	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	Putative arginyl-tRNA--protein transferase; May conjugate Arg from its aminoacyl-tRNA to the N- termini of proteins containing an N-terminal aspartate or glutamate	0.647
CN09_09660	hisA	CN09_09660	CN09_17485	1-aminocyclopropane-1-carboxylate deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; Derived by automated computational analysis using gene prediction method- Protein Homology	0.798

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About