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CN09_09695 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_09695" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_09695Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)    
Predicted Functional Partners:
CN09_03955
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (340 aa)
   
          0.500
CN09_21770
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (398 aa)
   
          0.476
CN09_12005
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (264 aa)
   
          0.466
CN09_07555
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (498 aa)
   
          0.456
CN09_21785
Dihydroorotase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
   
          0.451
CN09_04180
Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (310 aa)
   
          0.446
CN09_03120
Urease-associated protein; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
   
          0.418
CN09_23165
Mannonate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
   
          0.404
CN09_09690
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (318 aa)
              0.403
CN09_30525
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (166 aa)
   
          0.401
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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