CN09_09835 protein (Agrobacterium rhizogenes)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_09835

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (151 aa)

Predicted Functional Partners:

topA

0.972

rnr

0.940

CN09_20025

0.938

CN09_09845

0.921

rpmG

0.880

CN09_09840

0.845

CN09_17430

0.734

CN09_28220

0.665

CN09_01190

0.635

CN09_07025

0.634

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01190	CN09_09835	CN09_01190	CN09_09835	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.635
CN09_01190	CN09_17430	CN09_01190	CN09_17430	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.523
CN09_01190	CN09_20025	CN09_01190	CN09_20025	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	UPF0262 protein CN09_20025; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0262 family	0.417
CN09_07025	CN09_09835	CN09_07025	CN09_09835	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.634
CN09_07025	CN09_17430	CN09_07025	CN09_17430	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.597
CN09_07025	CN09_20025	CN09_07025	CN09_20025	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	UPF0262 protein CN09_20025; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0262 family	0.614
CN09_07025	CN09_28220	CN09_07025	CN09_28220	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.484
CN09_09835	CN09_01190	CN09_09835	CN09_01190	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.635
CN09_09835	CN09_07025	CN09_09835	CN09_07025	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.634
CN09_09835	CN09_09840	CN09_09835	CN09_09840	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.845
CN09_09835	CN09_09845	CN09_09835	CN09_09845	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.921
CN09_09835	CN09_17430	CN09_09835	CN09_17430	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.734
CN09_09835	CN09_20025	CN09_09835	CN09_20025	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	UPF0262 protein CN09_20025; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0262 family	0.938
CN09_09835	CN09_28220	CN09_09835	CN09_28220	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.665
CN09_09835	rnr	CN09_09835	CN09_09830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs	0.940
CN09_09835	rpmG	CN09_09835	CN09_09850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL33 family	0.880
CN09_09835	topA	CN09_09835	CN09_09825	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA super [...]	0.972
CN09_09840	CN09_09835	CN09_09840	CN09_09835	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_09840	CN09_09845	CN09_09840	CN09_09845	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.845
CN09_09840	rnr	CN09_09840	CN09_09830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Ribonuclease R; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs	0.742

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