CN09_10245 protein (Agrobacterium rhizogenes)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

co-expression

protein homology

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Score

CN09_10245

DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (96 aa)

Predicted Functional Partners:

CN09_08270

0.924

CN09_33540

0.860

ispG

0.782

CN09_26475

0.759

CN09_10600

0.755

CN09_04265

0.750

CN09_06920

0.736

CN09_04260

0.736

cpoB

0.727

CN09_17285

0.727

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_04260	CN09_04265	CN09_04260	CN09_04265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.591
CN09_04260	CN09_06920	CN09_04260	CN09_06920	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.673
CN09_04260	CN09_10245	CN09_04260	CN09_10245	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.736
CN09_04260	CN09_10600	CN09_04260	CN09_10600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.776
CN09_04265	CN09_04260	CN09_04265	CN09_04260	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.591
CN09_04265	CN09_06920	CN09_04265	CN09_06920	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.697
CN09_04265	CN09_10245	CN09_04265	CN09_10245	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.750
CN09_04265	CN09_10600	CN09_04265	CN09_10600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.775
CN09_06920	CN09_04260	CN09_06920	CN09_04260	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.673
CN09_06920	CN09_04265	CN09_06920	CN09_04265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.697
CN09_06920	CN09_10245	CN09_06920	CN09_10245	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.736
CN09_06920	CN09_10600	CN09_06920	CN09_10600	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.761
CN09_06920	CN09_26475	CN09_06920	CN09_26475	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Regulatory protein RecX; Modulates RecA activity	0.562
CN09_08270	CN09_10245	CN09_08270	CN09_10245	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.924
CN09_08270	CN09_17285	CN09_08270	CN09_17285	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_08270	ispG	CN09_08270	CN09_29465	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate; Belongs to the IspG family	0.999
CN09_10245	CN09_04260	CN09_10245	CN09_04260	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.736
CN09_10245	CN09_04265	CN09_10245	CN09_04265	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.750
CN09_10245	CN09_06920	CN09_10245	CN09_06920	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.736
CN09_10245	CN09_08270	CN09_10245	CN09_08270	DNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.924

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