rnd protein (Agrobacterium rhizogenes) - STRING interaction network

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rnd

Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family (381 aa)

Predicted Functional Partners:

CN09_10470

0.977

CN09_11880

0.884

CN09_01825

0.844

CN09_01860

0.844

macB

0.802

aspS

0.786

CN09_07745

0.749

CN09_24575

0.744

purM

0.744

queF

0.731

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01825	CN09_01860	CN09_01825	CN09_01860	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily	0.999
CN09_01825	CN09_07745	CN09_01825	CN09_07745	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.849
CN09_01825	CN09_24575	CN09_01825	CN09_24575	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.472
CN09_01825	purM	CN09_01825	CN09_10510	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Phosphoribosylformylglycinamidine cyclo-ligase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01825	rnd	CN09_01825	CN09_10475	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.844
CN09_01860	CN09_01825	CN09_01860	CN09_01825	D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_01860	macB	CN09_01860	CN09_25550	D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily	Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	0.440
CN09_01860	purM	CN09_01860	CN09_10510	D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily	Phosphoribosylformylglycinamidine cyclo-ligase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.863
CN09_01860	rnd	CN09_01860	CN09_10475	D-arabinose 5-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.844
CN09_07745	CN09_01825	CN09_07745	CN09_01825	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.849
CN09_07745	macB	CN09_07745	CN09_25550	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	0.894
CN09_07745	rnd	CN09_07745	CN09_10475	ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.749
CN09_10470	aspS	CN09_10470	CN09_10460	Copper oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps- L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily	0.418
CN09_10470	rnd	CN09_10470	CN09_10475	Copper oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.977
CN09_11880	rnd	CN09_11880	CN09_10475	UPF0260 protein CN09_11880; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UPF0260 family	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.884
CN09_24575	CN09_01825	CN09_24575	CN09_01825	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.472
CN09_24575	rnd	CN09_24575	CN09_10475	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.744
aspS	CN09_10470	CN09_10460	CN09_10470	Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps- L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily	Copper oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.418
aspS	purM	CN09_10460	CN09_10510	Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps- L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily	Phosphoribosylformylglycinamidine cyclo-ligase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.739
aspS	rnd	CN09_10460	CN09_10475	Aspartate--tRNA(Asp/Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps- L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily	Ribonuclease D; Exonuclease involved in the 3’ processing of various precursor tRNAs. Initiates hydrolysis at the 3’-terminus of an RNA molecule and releases 5’-mononucleotides; Belongs to the RNase D family	0.786

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