node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CN09_29405 | CN09_34305 | CN09_29405 | CN09_34305 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | 0.999 |
CN09_29405 | hrpB | CN09_29405 | CN09_17415 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
CN09_29405 | rnd | CN09_29405 | CN09_10475 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | Ribonuclease d; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides | 0.996 |
CN09_29405 | rph | CN09_29405 | CN09_14470 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation | 0.999 |
CN09_29405 | rplR | CN09_29405 | CN09_08815 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance | 0.996 |
CN09_29405 | rplW | CN09_29405 | CN09_08885 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome | 0.996 |
CN09_29405 | rpmD | CN09_29405 | CN09_08805 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | 50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.996 |
CN09_29405 | rpsD | CN09_29405 | CN09_06590 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | 0.999 |
CN09_29405 | rpsE | CN09_29405 | CN09_08810 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | Small subunit ribosomal protein s5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body | 0.999 |
CN09_29405 | rpsK | CN09_29405 | CN09_08780 | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | Small subunit ribosomal protein s11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome | 0.999 |
CN09_34305 | CN09_29405 | CN09_34305 | CN09_29405 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
CN09_34305 | hrpB | CN09_34305 | CN09_17415 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.999 |
CN09_34305 | rnd | CN09_34305 | CN09_10475 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | Ribonuclease d; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides | 0.996 |
CN09_34305 | rph | CN09_34305 | CN09_14470 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation | 0.999 |
CN09_34305 | rplR | CN09_34305 | CN09_08815 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance | 0.899 |
CN09_34305 | rplW | CN09_34305 | CN09_08885 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome | 0.880 |
CN09_34305 | rpmD | CN09_34305 | CN09_08805 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | 50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology | 0.916 |
CN09_34305 | rpsD | CN09_34305 | CN09_06590 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | 0.999 |
CN09_34305 | rpsE | CN09_34305 | CN09_08810 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | Small subunit ribosomal protein s5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body | 0.999 |
CN09_34305 | rpsK | CN09_34305 | CN09_08780 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | Small subunit ribosomal protein s11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome | 0.999 |