STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_10615Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology (686 aa)    
Predicted Functional Partners:
CN09_12025
Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
0.724
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate
       0.644
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan
       0.628
CN09_10610
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.607
CN09_10620
Abc transporter substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system
       0.515
CN09_12525
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.435
CN09_00260
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.423
CN09_10605
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.417
rplQ
50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology
      0.410
gpsA
Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family
     
 0.409
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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