CN09_10645 protein (Agrobacterium rhizogenes)

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Score

CN09_10645

DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology (149 aa)

Predicted Functional Partners:

pepA

0.999

CN09_10665

0.914

lptD

0.880

ksgA

0.833

CN09_10675

0.830

CN09_07310

0.795

recO

0.752

CN09_28455

0.751

CN09_05285

0.746

CN09_27555

0.745

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_05285	CN09_10645	CN09_05285	CN09_10645	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	0.746
CN09_05285	CN09_10665	CN09_05285	CN09_10665	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.447
CN09_05285	CN09_28455	CN09_05285	CN09_28455	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)	0.691
CN09_05285	ksgA	CN09_05285	CN09_10685	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.471
CN09_05285	lptD	CN09_05285	CN09_10670	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family	0.542
CN09_05285	recO	CN09_05285	CN09_10970	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination	0.765
CN09_07310	CN09_10645	CN09_07310	CN09_10645	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3’-end of a DNA strand; the delta’ subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	0.795
CN09_07310	CN09_10665	CN09_07310	CN09_10665	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3’-end of a DNA strand; the delta’ subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method- Protein Homology	Permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.583
CN09_07310	CN09_10675	CN09_07310	CN09_10675	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3’-end of a DNA strand; the delta’ subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method- Protein Homology	Molecular chaperone SurA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.663
CN09_07310	ksgA	CN09_07310	CN09_10685	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3’-end of a DNA strand; the delta’ subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.707
CN09_07310	lptD	CN09_07310	CN09_10670	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3’-end of a DNA strand; the delta’ subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method- Protein Homology	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family	0.528
CN09_10645	CN09_05285	CN09_10645	CN09_05285	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.746
CN09_10645	CN09_07310	CN09_10645	CN09_07310	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	DNA polymerase III subunit delta; Catalyzes the DNA-template-directed extension of the 3’-end of a DNA strand; the delta’ subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.795
CN09_10645	CN09_10665	CN09_10645	CN09_10665	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Permease; Derived by automated computational analysis using gene prediction method- Protein Homology	0.914
CN09_10645	CN09_10675	CN09_10645	CN09_10675	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Molecular chaperone SurA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.830
CN09_10645	CN09_27555	CN09_10645	CN09_27555	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.745
CN09_10645	CN09_28455	CN09_10645	CN09_28455	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Outer-membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)	0.751
CN09_10645	ksgA	CN09_10645	CN09_10685	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits	0.833
CN09_10645	lptD	CN09_10645	CN09_10670	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family	0.880
CN09_10645	pepA	CN09_10645	CN09_10650	DNA polymerase III subunit chi; Derived by automated computational analysis using gene prediction method- Protein Homology	Probable cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides; Belongs to the peptidase M17 family	0.999

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